01799895efc35ab49d3e04452c1052cd English dataset Polly Hadžiabdić British Oceanographic Data Centre Head of the BODC Requests Team Joseph Proudman Building 6 Brownlow Street Liverpool Merseyside L3 5DA United Kingdom enquiries@bodc.ac.uk https://www.bodc.ac.uk/ pointOfContact 2022-02-18T12:41:00 MEDIN 3.1.1 urn:ogc:def:crs:EPSG::4326 OGP Biogeochemical cycling of Nitrogenous osmolytes in the surface ocean in the English Channel from 2015-2017 British Oceanographic Data Centre record 1048-NE-M002233-1 2022-02-18 publication 2021-01-05 creation 2021-01-05 revision EDMED7100 http://www.bodc.ac.uk/ This dataset comprises measurements of microbial uptake activities of betaine and choline, particulate phase osmolytes, amplicon sequencing of marker genese involved in Nitrogenous-osmolyte catabolism, and single cell genome data. Water samples were collected from at the L4 station of the Western Channel Observatory between April 27, 2015 to April 24, 2017 using Niskin bottles attached to a rosette sampler deployed from the RV Plymouth Quest. Nitrogenous osmolytes (glycine betaine, choline and trimethylamine N-oxide are essential components for most organisms in the marine environment. They enable cells to exist in a salty environment, but also have several other proposed uses. The aim of the project is to understand the seasonal cycle of glycine betaine, trimethylamine N-oxide and choline at Station L4. The water samples were analysed for the microbial assimilation and dissimilation activities using 14C labelled betaine and choline, respectively. The data will be incorporated to the European Regional Seas Ecosystem Model (ERSEM) coupled with the hydrodynamic model General Ocean Turbulent Model (GOTM) to simulate the N-osmolyte cycling at the L4 station. The data were collected under the project Biogeochemical cycling of N-osmolytes in the surface ocean funded by NERC Discovery Science grants NE/M002233/1 (parent), NE/M003361/1 (child), NE/M002934/1 (child). The grants were led by Dr Yin Chen, Dr Ruth Airs, and Dr Wei Huang respectively. Unknown Plymouth Marine Laboratory Unknown +44 (0)1752 633 100 Prospect Place The Hoe Plymouth England PL1 3DH United Kingdom forinfo@pml.ac.uk http://www.pml.ac.uk owner Unknown Plymouth Marine Laboratory Unknown +44 (0)1752 633 100 Prospect Place The Hoe Plymouth England PL1 3DH United Kingdom forinfo@pml.ac.uk http://www.pml.ac.uk originator Unknown University of Oxford Department of Engineering Science Unknown +44 (0)1865 273000 Parks Road Oxford Oxfordshire United Kingdom jane.frew@eng.ox.ac.uk http://www.eng.ox.ac.uk/ owner Unknown University of Oxford Department of Engineering Science Unknown +44 (0)1865 273000 Parks Road Oxford Oxfordshire United Kingdom jane.frew@eng.ox.ac.uk http://www.eng.ox.ac.uk/ originator Unknown University of Warwick, Department of Biological Sciences Unknown +44 (0)2476 523517 Gibbet Hill Road Coventry Warwickshire CV4 7AL United Kingdom inapplicable http://www2.warwick.ac.uk/fac/sci/bio/ owner Unknown University of Warwick, Department of Biological Sciences Unknown +44 (0)2476 523517 Gibbet Hill Road Coventry Warwickshire CV4 7AL United Kingdom inapplicable http://www2.warwick.ac.uk/fac/sci/bio/ originator British Oceanographic Data Centre Director Joseph Proudman Building 6 Brownlow Street Liverpool Merseyside L3 5DA United Kingdom enquiries@bodc.ac.uk https://www.bodc.ac.uk/ custodian British Oceanographic Data Centre Director Joseph Proudman Building 6 Brownlow Street Liverpool Merseyside L3 5DA United Kingdom enquiries@bodc.ac.uk https://www.bodc.ac.uk/ distributor asNeeded Oceanographic geographical features INSPIRE themes 2009-07-31 revision Natural Environment Research Council Designated Data Centres Marine Environmental Data and Information Network MEDIN metadata record availability 2012-01-11 revision Uptake of other nutrients in the water column SeaDataNet PDV 2022-01-30 revision unknown Vertical Coverages 2020-05-21 revision otherRestrictions No limitations apply Data are only available on the basis of case-by-case negotiation for usage otherRestrictions Usage restrictions are specified in the terms of the licence English oceans 4.2172 4.2172 50.25 50.25 SeaVoX water bodies 2021-10-28 revision English Channel 2015-04-27 2017-04-24 Delimited https://doi.org/10.5281/zenodo.4288840 Dataset Web Site information https://www.bodc.ac.uk/data/published_data_library/catalogue/10.5285/c4bcd70b-e380-72c1-e053-6c86abc01060/ Published dataset - doi:10.5285/c4bcd70b-e380-72c1-e053-6c86abc01060 Mausz M.A., Chen Y., Airs R., Scanlan D.J., Huang W. (2021). Microbial uptake activities of N-osmolytes (glycine betaine and choline), uptake into particulate cell biomass and oxidation to CO₂ in coastal surface seawater, in the Western English Channel, from 2015-2017. NERC EDS British Oceanographic Data Centre NOC. doi: 10/gmm3 download dataset COMMISSION REGULATION (EU) No 1089/2010 of 23 November 2010 implementing Directive 2007/2/EC of the European Parliament and of the Council as regards interoperability of spatial data sets and services 2010-12-08 publication BODC protocols are based on the Open Archival Information System (OAIS) model enabling BODC to iterate towards compliance with the on-going evolution and development of community requirements including FAIR (Findable,Accessible,Interoperable,Reusable), TRUST (Transparency, Responsibility, User community, Sustainability, Technology) and CARE (Collective Benefit, Authority to Control, Responsibility, Ethics). Data managers quality assure submissions and assemble the metadata necessary for curation. Submissions (as received) are placed in a long-term accession and stored in triplicate across multiple sites. Appropriate data are transferred into a standard internal format with source variable names mapped to controlled vocabularies, documentation assembled, and metadata loaded into BODC databases. Access to these data is through direct request, the BODC website and through partner repositories such as SeaDataNet. Access control is attained by assigning a data policy to each set of data and this policy is used to administer access when data are requested. Discovery metadata is aligned with EU INSPIRE (through MEDIN) and SeaDataNet community standards. Data are converted to open community formats including Ocean Data View ASCII and SeaDataNet NetCDF, with data described using terms from the NERC vocabulary server. BODC submission agreements are documented on the BODC website and customer service is assured with a dedicated requests team that serve data following local regulations including General Data Protection Regulation (GDPR) 2018 and Environmental Information Regulations (EIR) 2004. true This dataset was created by scientists for the NERC Discovery Science project titled ‘Biogeochemical cycling of N-osmolytes in the surface ocean’ with grant references NE/M002233/1 (parent), NE/M003361/1 (child), NE/M002934/1 (child) following their in-house data processing and quality control procedures. The data were then provided to the British Oceanographic Data Centre (BODC) for long-term archive and data publication in the BODC Published Data Library as well as ingestion into the BODC NODB.