BGS Hosted Metadata
Biogeochemical cycling of Nitrogenous osmolytes in the surface ocean in the English Channel from 2015-2017
This dataset comprises measurements of microbial uptake activities of betaine and choline, particulate phase osmolytes, amplicon sequencing of marker genese involved in Nitrogenous-osmolyte catabolism, and single cell genome data. Water samples were collected from at the L4 station of the Western Channel Observatory between April 27, 2015 to April 24, 2017 using Niskin bottles attached to a rosette sampler deployed from the RV Plymouth Quest. Nitrogenous osmolytes (glycine betaine, choline and trimethylamine N-oxide are essential components for most organisms in the marine environment. They enable cells to exist in a salty environment, but also have several other proposed uses. The aim of the project is to understand the seasonal cycle of glycine betaine, trimethylamine N-oxide and choline at Station L4. The water samples were analysed for the microbial assimilation and dissimilation activities using 14C labelled betaine and choline, respectively. The data will be incorporated to the European Regional Seas Ecosystem Model (ERSEM) coupled with the hydrodynamic model General Ocean Turbulent Model (GOTM) to simulate the N-osmolyte cycling at the L4 station. The data were collected under the project Biogeochemical cycling of N-osmolytes in the surface ocean funded by NERC Discovery Science grants NE/M002233/1 (parent), NE/M003361/1 (child), NE/M002934/1 (child). The grants were led by Dr Yin Chen, Dr Ruth Airs, and Dr Wei Huang respectively.
Simple
- Alternate title
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British Oceanographic Data Centre record 1048-NE-M002233-1
- Date (Publication)
- 2022-02-18
- Date (Creation)
- 2021-01-05
- Date (Revision)
- 2021-01-05
- Citation identifier
- http://www.bodc.ac.uk/ / EDMED7100
- Point of contact
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Organisation name Individual name Electronic mail address Role Plymouth Marine Laboratory
Unknown
Owner Plymouth Marine Laboratory
Unknown
Originator University of Oxford Department of Engineering Science
Unknown
Owner University of Oxford Department of Engineering Science
Unknown
Originator University of Warwick, Department of Biological Sciences
Unknown
inapplicable
Owner University of Warwick, Department of Biological Sciences
Unknown
inapplicable
Originator British Oceanographic Data Centre
Custodian British Oceanographic Data Centre
Distributor
- Maintenance and update frequency
- As needed
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INSPIRE themes
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MEDIN metadata record availability
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SeaDataNet PDV
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Vertical Coverages
- Access constraints
- Other restrictions
- Other constraints
- No limitations apply
- Other constraints
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Data are only available on the basis of case-by-case negotiation for usage
- Use constraints
- Other restrictions
- Other constraints
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Usage restrictions are specified in the terms of the licence
- Spatial representation type
- Text, table
- Language
- English
- Topic category
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- Oceans
)
- Geographic identifier
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English Channel
SeaVoX water bodies 2021-10-28 revision
- Begin date
- 2015-04-27
- End date
- 2017-04-24
- Unique resource identifier
- urn:ogc:def:crs:EPSG::4326
- Codespace
-
OGP
- Distribution format
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Name Version Delimited
- OnLine resource
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Protocol Linkage Name https://doi.org/10.5281/zenodo.4288840 Dataset Web Site
- OnLine resource
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Protocol Linkage Name https://www.bodc.ac.uk/data/published_data_library/catalogue/10.5285/c4bcd70b-e380-72c1-e053-6c86abc01060/ Published dataset - doi:10.5285/c4bcd70b-e380-72c1-e053-6c86abc01060
- Hierarchy level
- Dataset
Conformance result
- Title
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COMMISSION REGULATION (EU) No 1089/2010 of 23 November 2010 implementing Directive 2007/2/EC of the European Parliament and of the Council as regards interoperability of spatial data sets and services
- Date (Publication)
- 2010-12-08
- Explanation
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BODC protocols are based on the Open Archival Information System (OAIS) model enabling BODC to iterate towards compliance with the on-going evolution and development of community requirements including FAIR (Findable,Accessible,Interoperable,Reusable), TRUST (Transparency, Responsibility, User community, Sustainability, Technology) and CARE (Collective Benefit, Authority to Control, Responsibility, Ethics). Data managers quality assure submissions and assemble the metadata necessary for curation. Submissions (as received) are placed in a long-term accession and stored in triplicate across multiple sites. Appropriate data are transferred into a standard internal format with source variable names mapped to controlled vocabularies, documentation assembled, and metadata loaded into BODC databases. Access to these data is through direct request, the BODC website and through partner repositories such as SeaDataNet. Access control is attained by assigning a data policy to each set of data and this policy is used to administer access when data are requested. Discovery metadata is aligned with EU INSPIRE (through MEDIN) and SeaDataNet community standards. Data are converted to open community formats including Ocean Data View ASCII and SeaDataNet NetCDF, with data described using terms from the NERC vocabulary server. BODC submission agreements are documented on the BODC website and customer service is assured with a dedicated requests team that serve data following local regulations including General Data Protection Regulation (GDPR) 2018 and Environmental Information Regulations (EIR) 2004.
- Pass
- Yes
- Statement
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This dataset was created by scientists for the NERC Discovery Science project titled ‘Biogeochemical cycling of N-osmolytes in the surface ocean’ with grant references NE/M002233/1 (parent), NE/M003361/1 (child), NE/M002934/1 (child) following their in-house data processing and quality control procedures. The data were then provided to the British Oceanographic Data Centre (BODC) for long-term archive and data publication in the BODC Published Data Library as well as ingestion into the BODC NODB.
Metadata
- File identifier
- 01799895efc35ab49d3e04452c1052cd XML
- Metadata language
- English
- Hierarchy level
- Dataset
- Date stamp
- 2022-02-18T12:41:00
- Metadata standard name
- MEDIN
- Metadata standard version
-
3.1.1
- Metadata author
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Organisation name Individual name Electronic mail address Role British Oceanographic Data Centre
Polly Hadžiabdić
Point of contact
))
