Laternula elliptica developmental bulk RNA-Seq data analysis results 2022, collected from Hangar Cove Rothera Point, on Adelaide Island in 2018

This dataset comprises mRNA that was extracted from Laternula elliptica developmental stages (blastula to juvenile) and sequenced (n=3 pools of 200 individual per stage). The resulting sequence data was analysed and the following results files and analysis scripts are available here: Results files from differential gene expression analysis in edgeR (edgeR_DE), results files from WGCNA analysis (WGCNA). Data collection was carried out over Hangar Cove Rothera Point, Adelaide Island, in Ryder Bay, from 2018-04-25 to 2018-09-25 by researchers with the British Antarctic Survey. The data was collected as part of research on the developmental biology of molluscs.

This work was supported by UKRI Natural Environment Research Council (NERC) Core Funding to the British Antarctic Survey, a DTG Studentship (Project Reference: NE/J500173/1) and a Junior Research Fellowship to VAS from Wolfson College, University of Cambridge.

Alternate title: Polar Data Centre (PDC) record GB/NERC/BAS/PDC/01607

Date (Publication): 2022-11-13

Citation identifier: http://www.antarctica.ac.uk/dms/metadata.php?id= / GB/NERC/BAS/PDC/01607

Point of contact

Organisation name	Individual name	Electronic mail address	Role
British Antarctic Survey		pdc@bas.ac.uk	Custodian
NERC EDS UK Polar Data Centre	Sleight, V., Clark, M., & Cavallo, A.	pdc@bas.ac.uk	Originator

Maintenance and update frequency: Unknown

Keywords

NDGO0001

NERC OAI Harvesting

NERC_DDC

GCMD Parameter Valids

EARTH SCIENCE > Biosphere > Animal Taxonomy > Mollusks

BAS Free-text keywords

biomineralisation
developmental biology
mollusc
transcriptomics

Use limitation: This data is governed by the NERC data policy http://www.nerc.ac.uk/research/sites/data/policy/ and supplied under Open Government Licence v.3 http://www.nationalarchives.gov.uk/doc/open-government-licence/version/3/.

Access constraints: Other restrictions

Other constraints: This data is governed by the NERC data policy http://www.nerc.ac.uk/research/sites/data/policy/ and supplied under Open Government Licence v.3 http://www.nationalarchives.gov.uk/doc/open-government-licence/version/3/.

Language: English

Topic category

Biota

Begin date: 2018-04-25

End date: 2018-09-25

Reference system identifier: OGP / urn:ogc:def:crs:EPSG::4326

Distribution format

Distributor contact

Organisation name	Individual name	Electronic mail address	Role
Polar Data Centre - British Antarctic Survey		pdc@bas.ac.uk	Distributor

OnLine resource

Protocol	Linkage	Name
http	https://www.ncbi.nlm.nih.gov/bioproject/PRJNA803976/	GET DATA

Hierarchy level: Dataset

Domain consistency

Measure identification: INSPIRE / Conformity_001

Conformance result

Title: INSPIRE Data Specification on unknown theme Guidelines

Date

Explanation: See the referenced specification

Pass: No

Statement: Triplicate RNA-Seq libraries were generated for each developmental stage

Raw reads (total 309,593,642) were cleaned using ea-utils tool v1.1.2 fastq-mcf (quality -q 30, and length -l 100), after cleaning 296,480,254 reads remained.