c42314b9-089e-48e7-b08e-8f664f5dc71c eng utf8 dataset dataset NERC EDS UK Polar Data Centre +44 (0)1223 221400 British Antarctic Survey, High Cross, Madingley Road Cambridge Cambridgeshire CB3 0ET United Kingdom polardatacentre@bas.ac.uk https://www.bas.ac.uk/team/business-teams/information-services/uk-polar-data-centre/ information pointOfContact 2019-01-24 ISO 19115 Geographic Information - Metadata ISO 19115:2003(E) European Petroleum Survey Group (EPSG) Geodetic Parameter Registry 2008-11-12 publication European Petroleum Survey Group EPSGadministrator@iogp.org https://www.epsg-registry.org/ EPSG Geodetic Parameter Dataset The EPSG Geodetic Parameter Dataset is a structured dataset of Coordinate Reference Systems and Coordinate Transformations, accessible through this online registry. information publisher urn:ogc:def:crs:EPSG::3031 6.18.3 Molluscan Shell Matrix Proteins 2019-01-24 creation 2019-01-24 revision 2019-01-24 publication 2019-01-24 released 1.0 https://doi.org/10.5285/c42314b9-089e-48e7-b08e-8f664f5dc71c doi GB/NERC/BAS/PDC/01132 https://data.bas.ac.uk/ Please cite this item as: Yarra, T. (2019). Molluscan Shell Matrix Proteins (Version 1.0) [Data set]. UK Polar Data Centre, British Antarctic Survey, Natural Environment Research Council, UK Research & Innovation. https://doi.org/10.5285/c42314b9-089e-48e7-b08e-8f664f5dc71c The database contains fasta sequences from UniProt and associated metadata for molluscan shell matrix proteins (SMPs). The database only contains SMPs that have been experimentally validated to be present in molluscan shell matrices (based on the publication(s) attached to the UniProtID). Metadata includes information on functional domains present in the sequence, as detected by InterproScan. With the advent of Next Generation Sequencing technologies, it is computationally resource intensive to run sequence similarity algorithms on all published data. Moreover, it is impractical to sort through hundreds of sequence similarity search results when working with non-model organisms, since pre-established functional annotations of sequences are generally not available. Therefore, this database was created in order to provide a targeted molluscan biomineralization dataset for sequence similarity algorithms (such as BLAST). Database created as part of doctoral research, funded under Marie Curie Innovative Training Networks (ITN) - Calcium in the Changing Environment (CACHE - Grant agreement 605051). No credit. completed Yarra, Tejaswi British Antarctic Survey, Natural Environment Research Council, UK Research & Innovation Researcher author NERC EDS UK Polar Data Centre +44 (0)1223 221400 British Antarctic Survey, High Cross, Madingley Road Cambridge Cambridgeshire CB3 0ET United Kingdom PDCServiceDesk@bas.ac.uk https://www.bas.ac.uk/team/business-teams/information-services/uk-polar-data-centre/ information pointOfContact asNeeded completed EARTH SCIENCE > Biosphere > Animal Taxonomy > Mollusks theme Global Change Master Directory (GCMD) Science Keywords 2026-01-27 publication 23 Global Change Data Center, Science and Exploration Directorate, Goddard Space Flight Center (GSFC) National Aeronautics and Space Administration (NASA) Greenbelt MD United States of America https://earthdata.nasa.gov/about/gcmd/global-change-master-directory-gcmd-keywords Global Change Master Directory (GCMD) Keywords The information provided on this page seeks to define how the GCMD Keywords are structured, used and accessed. It also provides information on how users can participate in the further development of the keywords. information publisher Biomineralization Molluscs SMPs Shell Matrix Proteins Shell formation theme Habitats and biotopes theme GEMET - INSPIRE themes, version 1.0 2021-01-06 revision otherRestrictions no limitations to public access otherRestrictions no limitations license Open Government Licence v3.0 otherRestrictions Data released under Open Government Licence V3.0: url url crossReference textTable eng utf8 biota -180.0 180.0 -90.0 90.0 It is recommended that careful attention be paid to the contents of any data, and that the author be contacted with any questions regarding appropriate use. If you find any errors or omissions, please report them to polardatacentre@bas.ac.uk. NERC EDS UK Polar Data Centre +44 (0)1223 221400 British Antarctic Survey, High Cross, Madingley Road Cambridge Cambridgeshire CB3 0ET United Kingdom PDCServiceDesk@bas.ac.uk https://www.bas.ac.uk/team/business-teams/information-services/uk-polar-data-centre/ information distributor application/vnd.ms-excel text/x-fasta text/plain bytes 445440 https://ramadda.data.bas.ac.uk/repository/entry/show?entryid=c42314b9-089e-48e7-b08e-8f664f5dc71c WWW:LINK-1.0-http--link Get Data Download data download bytes 445440 https://ramadda.data.bas.ac.uk/repository/entry/show?entryid=c42314b9-089e-48e7-b08e-8f664f5dc71c WWW:LINK-1.0-http--link Get Data Download data download bytes 445440 https://ramadda.data.bas.ac.uk/repository/entry/show?entryid=c42314b9-089e-48e7-b08e-8f664f5dc71c WWW:LINK-1.0-http--link Get Data Download data download dataset Methodology: Data was gathered by mining metadata from Trembl database for various biomineralization specific keywords. Example keywords include: Molluscs, shell, bivalve, aragonite, calcite, prismatic, foliated, mantle, mantle edge, central mantle, pallial mantle, etc. Only SMPs uploaded to Uniprot were included in this database. The database only contains SMPs that have been experimentally validated to be present in molluscan shell matrices (based on the publication(s) attached to the UniProtID). Uniprot entries for only mantle specific sequences were not included, since all such sequences were determined to be biomineralization related based on sequence similarity results to the proteins identified in shell matrices, and were not experimentally validated. Data collection: Data was collected from Uniprot (https://www.uniprot.org/). Data quality: Database is based on uploaded Unioprot IDs entries until JULY 2018. No major publications have since been released that match the criteria to be included in the database. Missing values are only present in the domain columns - A missing value indicates that there were no functional domains detected in the sequence, based on InterproScan results from Interpro databases. asNeeded completed