BGS Hosted Metadata
Antibiotic resistance genes found in soils across the entire Scottish landscape (2007-10)
The dataset collates the relative concentration of nearly 300 antimicrobial resistance (AMR) genes found in soil locations across Scotland. Soils were obtained from the National Soils Inventory of Scotland (NSIS2), from which the total community DNA were extracted and provided to assess AMR gene content. Sampling of the NSIS2 was conducted between 2007-2010 at 183 soil locations representing intersections of a 20km grid across all of Scotland. For each sample, nearly 300 AMR genes were assessed representing major antibiotic classes, and included many resistance traits: aminoglycosides, beta-lactams, FCA (fluoroquinolone, quinolone, chloramphenicol, florfenicol and amphenicol resistance genes), MLSB (macrolide, lincosamide, streptogramin B), tetracycline, vancomycin, sulphonamide, efflux pumps and integron genes. The data represent relative gene abundance, i.e., the amount of genes per "total bacteria". Full details about this dataset can be found at https://doi.org/10.5285/d3498e93-4ac5-4eab-bc1a-eb2328771d24
Simple
- Date (Publication)
- 2019-07-17
- Citation identifier
- https://catalogue.ceh.ac.uk/id/d3498e93-4ac5-4eab-bc1a-eb2328771d24
- Citation identifier
- doi: / 10.5285/d3498e93-4ac5-4eab-bc1a-eb2328771d24
- Other citation details
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Knapp, C.W., Graham, D.W., Freitag, T., Pagaling, E., Hough, R., Avery, L., Zhu, Y.-., Su, J., Zhou, X.Y. (2019). Antibiotic resistance genes found in soils across the entire Scottish landscape (2007-10). NERC Environmental Information Data Centre 10.5285/d3498e93-4ac5-4eab-bc1a-eb2328771d24
- Point of contact
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Organisation name Individual name Electronic mail address Role University of Strathclyde Knapp, C.W. Author Newcastle University Graham, D.W. Author James Hutton Institute Freitag, T.
Author James Hutton Institute Pagaling, E.
Author James Hutton Institute Hough, R.
Author James Hutton Institute Avery, L.
Author Institute of Urban Environment, Chinese Academy of Science
Zhu, Y.-.
Author Institute of Urban Environment, Chinese Academy of Sciences
Su, J.
Author Institute of Urban Environment, Chinese Academy of Sciences
Zhou, X.Y.
Author University of Strathclyde Knapp, C. Point of contact NERC Environmental Information Data Centre Publisher NERC EDS Environmental Information Data Centre Custodian
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GEMET - INSPIRE themes, version 1.0
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Soil
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- Access constraints
- Other restrictions
- Other constraints
- no limitations
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© Natural Environment Research Council
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- Other restrictions
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© University of Strathclyde
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© Newcastle University
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- Other restrictions
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© James Hutton Institute
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- Other restrictions
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© Chinese Academy of Sciences
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- Other restrictions
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If you reuse this data, you should cite: Knapp, C.W., Graham, D.W., Freitag, T., Pagaling, E., Hough, R., Avery, L., Zhu, Y.-., Su, J., Zhou, X.Y. (2019). Antibiotic resistance genes found in soils across the entire Scottish landscape (2007-10). NERC Environmental Information Data Centre https://doi.org/10.5285/d3498e93-4ac5-4eab-bc1a-eb2328771d24
- Spatial representation type
- Text, table
- Denominator
- 0
- Distance
- 20000 urn:ogc:def:uom:EPSG::9001
- Language
- English
- Character set
- UTF8
- Topic category
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- Environment
- Begin date
- 2007-01-01
- End date
- 2010-12-31
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- Unique resource identifier
- WGS 84
- Distribution format
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Name Version Comma-separated values (CSV)
- Distributor contact
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Organisation name Individual name Electronic mail address Role NERC EDS Environmental Information Data Centre
Distributor
- OnLine resource
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Protocol Linkage Name https://data-package.ceh.ac.uk/data/d3498e93-4ac5-4eab-bc1a-eb2328771d24 Download the data
- OnLine resource
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Protocol Linkage Name https://data-package.ceh.ac.uk/sd/d3498e93-4ac5-4eab-bc1a-eb2328771d24.zip Supporting information
- Hierarchy level
- Dataset
- Other
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dataset
Conformance result
- Title
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Commission Regulation (EU) No 1089/2010 of 23 November 2010 implementing Directive 2007/2/EC of the European Parliament and of the Council as regards interoperability of spatial data sets and services
- Date (Publication)
- 2010-12-08
- Statement
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The dataset was developed by Charles Knapp (University of Strathclyde) 2016-2018, in close collaboration with James Hutton Institute, Institute of Urban Environment – Chinese Academy of Sciences, and Newcastle University. The data were compiled under the auspices of the NERC AMR in the Real World grant (NE/N019776/1). For further details please see supporting documentation
Metadata
- File identifier
- d3498e93-4ac5-4eab-bc1a-eb2328771d24 XML
- Metadata language
- English
- Character set
- 8859 Part 1
- Hierarchy level
- Dataset
- Hierarchy level name
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dataset
- Date stamp
- 2025-03-21T15:33:47
- Metadata standard name
- UK GEMINI
- Metadata standard version
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2.3
- Metadata author
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Organisation name Individual name Electronic mail address Role NERC EDS Environmental Information Data Centre Point of contact
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