BGS Hosted Metadata
Antibiotic susceptibility tests and resistance genes in Escherichia coli from humans, poultry and environmental samples in urban and rural Bangladesh (2017)
Antibiotic susceptibility tests are presented as the zone of inhibition using the disc-diffusion method, and categorized as resistant, intermediate or susceptible. DNA samples from antibiotic-resistant bacteria were analysed for the presence or absence of resistance genes using polymerase chain reaction (PCR). Laboratory analyses were conducted by trained staff at the International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b). The aim of the study was to identify the antibiotic-susceptibility profiles and resistance genes of bacteria (Escherichia coli) obtained from humans, poultry and the environment. Bacterial isolates previously identified with resistance to third-generation cephalosporins or carbapenems were included in the analysis. Bacterial samples originated from rural households and poultry farms (broiler chickens) in Mirzapur, Tangail district; and urban food markets in Dhaka city, Bangladesh. Environmental samples included surface water, water supply, wastewater, soil, animal faeces (poultry and cattle) and solid waste. The survey was part of a wider research project, Spatial and Temporal Dynamics of Antimicrobial Resistance Transmission from the Outdoor Environment to Humans in Urban and Rural Bangladesh. The research was funded by NERC/BBSRC/MRC on behalf of the Antimicrobial Resistance Cross-Council Initiative award NE/N019555/1. Full details about this dataset can be found at https://doi.org/10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
Simple
- Date (Publication)
- 2019-02-11
- Date (Creation)
- 2018-12-15
- Citation identifier
- https://catalogue.ceh.ac.uk/id/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
- Citation identifier
- doi: / 10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
- Other citation details
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Rousham, E.K., Islam, M.A., Unicomb, L., Asaduzzaman, M., Islam, R., Amin, B., Mozmader, T.I.M.A., Hossain, M.I., Rahman, M. (2019). Antibiotic susceptibility tests and resistance genes in Escherichia coli from humans, poultry and environmental samples in urban and rural Bangladesh (2017). NERC Environmental Information Data Centre 10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
- Point of contact
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Organisation name Individual name Electronic mail address Role Loughborough University Rousham, E.
Point of contact Loughborough University Rousham, E.K. Author International Centre for Diarrhoeal Disease Research, Bangladesh Islam, M.A. Author International Centre for Diarrhoeal Disease Research, Bangladesh Unicomb, L.
Author International Centre for Diarrhoeal Disease Research, Bangladesh Asaduzzaman, M. Author International Centre for Diarrhoeal Disease Research, Bangladesh Islam, R.
Author International Centre for Diarrhoeal Disease Research, Bangladesh Amin, B.
Author International Centre for Diarrhoeal Disease Research, Bangladesh Mozmader, T.I.M.A.
Author International Centre for Diarrhoeal Disease Research, Bangladesh Hossain, M.I.
Author International Centre for Diarrhoeal Disease Research, Bangladesh Rahman, M.
Author NERC EDS Environmental Information Data Centre Custodian NERC Environmental Information Data Centre Publisher
- Maintenance and update frequency
- Not planned
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Wikidata
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GEMET - Concepts, version 4.1.3
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GeoNames
- Keywords
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antibiotic susceptibility tests
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antimicrobial resistance
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bacterial counts
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carbapenem
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third-generation cephalosporin
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DNA
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- Access constraints
- Other restrictions
- Other constraints
- no limitations
- Use constraints
- Other restrictions
- Other constraints
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© Loughborough University
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- Other restrictions
- Other constraints
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© International Centre for Diarrhoeal Disease Research, Bangladesh
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- Other restrictions
- Use constraints
- Other restrictions
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© Natural Environment Research Council
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- Other restrictions
- Other constraints
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If you reuse this data, you should cite: Rousham, E.K., Islam, M.A., Unicomb, L., Asaduzzaman, M., Islam, R., Amin, B., Mozmader, T.I.M.A., Hossain, M.I., Rahman, M. (2019). Antibiotic susceptibility tests and resistance genes in Escherichia coli from humans, poultry and environmental samples in urban and rural Bangladesh (2017). NERC Environmental Information Data Centre https://doi.org/10.5285/dda6dd55-f955-4dd5-bc03-b07cc8548a3d
- Spatial representation type
- Text, table
- Language
- English
- Character set
- UTF8
- Topic category
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- Health
- Begin date
- 2017-02-01
- End date
- 2018-10-31
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- Unique resource identifier
- WGS 84
- Distribution format
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Name Version Comma-separated values (CSV)
- Distributor contact
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Organisation name Individual name Electronic mail address Role NERC EDS Environmental Information Data Centre
Distributor
- OnLine resource
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Protocol Linkage Name https://data-package.ceh.ac.uk/data/dda6dd55-f955-4dd5-bc03-b07cc8548a3d Download the data
- OnLine resource
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Protocol Linkage Name https://data-package.ceh.ac.uk/sd/dda6dd55-f955-4dd5-bc03-b07cc8548a3d.zip Supporting information
- Hierarchy level
- Dataset
- Other
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dataset
Conformance result
- Title
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Commission Regulation (EU) No 1089/2010 of 23 November 2010 implementing Directive 2007/2/EC of the European Parliament and of the Council as regards interoperability of spatial data sets and services
- Date (Publication)
- 2010-12-08
- Statement
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Water (drinking, stream, waste and pond), soil and faecal samples were collected from farms and urban markets. Laboratory analysis of bacterial samples took place at International Centre for Diarrhoeal Disease Research , Dhaka, Bangladesh. Laboratory results were recorded on paper-based forms or generated from automated readings, entered into Excel then converted to .csv files for ingestion into the Environmental Information Data Centre. Reference organisms and Clinical and Laboratory Standard Institute (CLSI) guidelines were followed.
Metadata
- File identifier
- dda6dd55-f955-4dd5-bc03-b07cc8548a3d XML
- Metadata language
- English
- Character set
- 8859 Part 1
- Hierarchy level
- Dataset
- Hierarchy level name
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dataset
- Date stamp
- 2025-11-13T16:25:58
- Metadata standard name
- UK GEMINI
- Metadata standard version
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2.3
- Metadata author
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Organisation name Individual name Electronic mail address Role NERC EDS Environmental Information Data Centre Point of contact
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