Date (Creation)

2020-10-07

Date (Revision)

2020-10-07

Date (Publication)

2020-10-07

Date (released)

2020-10-07

Edition

1.0

Unique resource identifier

https://doi.org/10.5285/65359151-158c-47d1-8c04-a59bc3a28f53

Codespace

doi

Unique resource identifier

GB/NERC/BAS/PDC/01403

Codespace

https://data.bas.ac.uk/

Unique resource identifier

NE/H014098/1

Codespace

award

Unique resource identifier

NE/H014772/1

Codespace

award

Unique resource identifier

NE/H01408X/1

Codespace

award

Other citation details

Please cite this item as: Robinson, C., Cox, F., Garnett, M., Horrocks, C., Dungait, J., & Newsham, K. (2020). Relative abundances of DNA and RNA of a previously undescribed Helotiales species in soils from Signy Island and Leonie Island, along with edaphic factors (Version 1.0) [Data set]. UK Polar Data Centre, Natural Environment Research Council, UK Research & Innovation. https://doi.org/10.5285/65359151-158c-47d1-8c04-a59bc3a28f53

Credit

No credit.

Status

Completed

Point of contact

Organisation name	Individual name	Electronic mail address	Role
University of Manchester	Robinson, Clare H.		Author
University of Manchester	Cox, Filipa		Author
NERC	Garnett, Mark		Author
Rothamsted Research	Horrocks, Claire		Author
Rothamsted Research	Dungait, Jennifer		Author
British Antarctic Survey	Newsham, Kevin		Author
NERC EDS UK Polar Data Centre		PDCServiceDesk@bas.ac.uk	Point of contact

Maintenance and update frequency

As needed

Maintenance note

Completed

Global Change Master Directory (GCMD) Science Keywords

• EARTH SCIENCE > Biosphere > Fungi

Theme

• Antarctica

• Carbon-13

• Carbon-14

• Helotiales

• soil age

Place

• Polynesia Point, Signy Island Antarctica

• Walton Terraces, Leonie Island Antarctica

GEMET - INSPIRE themes, version 1.0

• Habitats and biotopes

Access constraints

Other restrictions

Other constraints

no limitations to public access

Access constraints

Other restrictions

Other constraints

no limitations

Use constraints

License

Other constraints

This dataset is supplied under the Open Government Licence v3.0: https://www.nationalarchives.gov.uk/doc/open-government-licence/version/3/

Unique resource identifier

url

Codespace

url

Association Type

Cross reference

Spatial representation type

Text, table

Language

English

Character set

UTF8

Topic category

• Biota

Begin date

2011-11-01

End date

2015-12-31

Supplemental Information

It is recommended that careful attention be paid to the contents of any data, and that the author be contacted with any questions regarding appropriate use. If you find any errors or omissions, please report them to polardatacentre@bas.ac.uk.

Title

European Petroleum Survey Group (EPSG) Geodetic Parameter Registry

Date (Publication)

2008-11-12

Cited responsible party

Organisation name	Individual name	Electronic mail address	Role
European Petroleum Survey Group		EPSGadministrator@iogp.org	Publisher

Unique resource identifier

urn:ogc:def:crs:EPSG::3031

Version

6.18.3

Hierarchy level

Dataset

Statement

Methodology:

Soils used in the analyses were sampled in October and November 2011 from active layers overlaying permafrost in six pits (0.40 x 0.40 m) dug under turves of Antarctic Hairgrass (Deschampsia antarctica). Three pits were dug at Polynesia Point on Signy Island (60.7107 deg S, 45.5849 deg W; altitude 34-45 m a.s.l.) in the South Orkney Islands and three were dug on Walton Terraces, on the north-eastern side of Leonie Island (67.5984 deg S, 68.3561 deg W; altitude 50-60 m a.s.l.) in the southern maritime Antarctic. The three pits at each island were separated by a mean distance of 311 m. Soils were sampled by hammering five sterile tubes (50 ml capacity) horizontally into the vertical faces of each pit at depths of 2, 4 and 8 cm, generating a total of 90 soil samples. Further details of sampling are provided in Cox et al. (2016; 2019) and Newsham et al. (2018). Soil was frozen at -20 deg C or -80 deg C within a few hours of sampling and was transported back to the UK at these temperatures, where it was thawed prior to analyses.

Soil pH, moisture and C and N concentrations were measured in bulked soils from each of the three depths in the three pits dug at each island, generating 18 samples in total. Soil pH was measured by adding approximately the same volume of deionised water to each soil sample to generate slurries and recording pH with a glass electrode (pH 21, Hanna Instruments, Leighton Buzzard, UK). Soil moisture was measured gravimetrically after drying c. 1 g of fresh soil at 105 deg C for 17 h. Sub-samples (c. 2.5 mg) of air-dried soil were weighed into foil capsules and were analysed for total C and N.

Carbon-14 and Carbon-13 determinations were made on the five replicate soils sampled from depths of 2, 4 and 8 cm in one of the three pits dug at each island, generating 30 samples in total. The soils were sent to the NERC (now NEIF) Radiocarbon Laboratory, where the samples were converted to carbon dioxide using either bomb combustion in a high-pressure oxygen atmosphere, or an elemental combustion system. Sample carbon dioxide was cryogenically purified under vacuum and split into aliquots. The delta carbon-13 (relative to the Vienna PDB standard) was determined on one aliquot of sample carbon dioxide by isotope ratio mass spectrometry. A second aliquot was converted to graphite using Fe: Zn reduction and analysed for carbon-14 content using accelerator mass spectrometry at the Scottish Universities Environmental Research Centre (East Kilbride, UK). Carbon-14 results were normalised to delta carbon-13 = -25 per mille and expressed as %modern and conventional radiocarbon ages (in years BP, where 0 BP = AD1950). Final mean residence time (MRT) of C in soil was determined using the Meathop Model, as described by Horrocks et al. (2020). The model calculates a maximum carbon-14 concentration of 114.33 %Modern (for a MRT of 30 years). This MRT was assigned to all values of >114 % Modern. Note that for sample FC_31, there were two solutions to the model, because of the rising and falling parts of the bomb-carbon-14 curve. Also note that for carbon-14 enrichment values of <97% Modern, a conventional radiocarbon age (CRA) was assigned for mean residence time since these samples showed no evidence of bomb-carbon-14 incorporation (Bol et al., Eur. J. Soil Sci. 50, 41-51, 1999).

As described by Cox et al. (2016; 2019), DNA and RNA were extracted simultaneously from soil samples (5 mg) taken from the 50 ml-capacity tubes using RNA PowerSoil Total RNA Isolation and DNA Elution Accessory kits (MoBio Laboratories, Carlsbad, CA, USA). Extracted RNA was treated with a Turbo DNA-free kit (Life technologies, Carlsbad, CA, USA), checked for contaminant DNA using PCR, and reverse transcribed using AccuScript High-Fidelity Reverse Transcriptase (Agilent, Santa Clara, CA, USA) and random nonamers. Internal transcribed spacer (ITS) regions in the extr...(13)

Data collection:

The following instruments were used in the analyses:

1. Total nitrogen and organic carbon concentrations: Carlo Erba NA1500 elemental analyser, CE Instruments, Wigan, UK

2. pH value: Hanna Instruments pH meter, Leighton Buzzard, UK

3. Elemental combustion: Costech ECS 4010, Italy

4. Isotope ratio mass spectrometry: Delta V, Thermo-Fisher, Germany

5. Bead purification: Beckman Coulter, Inc, Brea, CA, USA

6. Qubit dsDNA HS Assay: Life Technologies, Carlsbad, CA, USA

Data quality:

Instruments were calibrated according to laboratory practices, with standards being deployed where necessary. No data losses and no data cleaning.

Metadata

File identifier

65359151-158c-47d1-8c04-a59bc3a28f53 XML

Metadata language

English

Character set

UTF8

Hierarchy level

Dataset

Hierarchy level name

dataset

Date stamp

2020-10-07

Metadata standard name

ISO 19115 Geographic Information - Metadata

Metadata standard version

ISO 19115:2003(E)

Metadata author

Organisation name	Individual name	Electronic mail address	Role
NERC EDS UK Polar Data Centre		polardatacentre@bas.ac.uk	Point of contact