BGS Hosted Metadata
Compositional and growth assay data for tree-hole bacteria communities under differing pH conditions, sampled summer 2021, Wytham Woods, Oxford
The data comprises both compositional data and growth assay data from an experiment of wild bacterial communities in Wytham Woods, Oxford. The communities live in puddles of water in tree-holes formed by the roots of beech trees. We manipulated the pH of tree-holes during the experiment for comparison with control tree-holes that were unmanipulated. Compositional data comprises the frequency of different Amplicon Sequencing Variants and derived measures of species diversity for samples taken over time (up to 12 weeks from the start of the experiment). The growth assay data comprises measurements of growth rates of community samples and isolates back in the laboratory, when grown on beech tea media manipulated to have different pHs. Full details about this dataset can be found at https://doi.org/10.5285/9d64f2bd-2918-416f-b08c-3369edbc1b30
Simple
- Date (Publication)
- 2025-10-20
- Citation identifier
- https://catalogue.ceh.ac.uk/id/9d64f2bd-2918-416f-b08c-3369edbc1b30
- Citation identifier
- doi: / 10.5285/9d64f2bd-2918-416f-b08c-3369edbc1b30
- Other citation details
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Barraclough, T.G., Sant, D.G., Wong, E.L.Y. (2025). Compositional and growth assay data for tree-hole bacteria communities under differing pH conditions, sampled summer 2021, Wytham Woods, Oxford. NERC EDS Environmental Information Data Centre 10.5285/9d64f2bd-2918-416f-b08c-3369edbc1b30
- Point of contact
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Organisation name Individual name Electronic mail address Role University of Oxford Timothy Giles Barraclough
Point of contact University of Oxford Barraclough, T.G. Author Rutgers, The State University of New Jersey Sant, D.G. Author Senckenberg Biodiversity and Climate Research Centre Wong, E.L.Y.
Author University of Oxford EMAIL NOT PROVIDED
Owner NERC EDS Environmental Information Data Centre Publisher NERC EDS Environmental Information Data Centre Custodian
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GEMET - INSPIRE themes, version 1.0
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Environmental Monitoring Facilities
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GEMET - Concepts, version 4.1.3
- Keywords
- Access constraints
- Other restrictions
- Other constraints
- no limitations
- Use constraints
- Other restrictions
- Use constraints
- Other restrictions
- Other constraints
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If you reuse this data, you should cite: Barraclough, T.G., Sant, D.G., Wong, E.L.Y. (2025). Compositional and growth assay data for tree-hole bacteria communities under differing pH conditions, sampled summer 2021, Wytham Woods, Oxford. NERC EDS Environmental Information Data Centre https://doi.org/10.5285/9d64f2bd-2918-416f-b08c-3369edbc1b30
- Spatial representation type
- Text, table
- Language
- English
- Character set
- UTF8
- Topic category
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- Biota
- Begin date
- 2021-05-11
- End date
- 2021-09-29
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- Unique resource identifier
- OSGB 1936 / British National Grid
- Distribution format
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Name Version Comma-separated values (CSV)
- Distributor contact
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Organisation name Individual name Electronic mail address Role NERC EDS Environmental Information Data Centre
Distributor
- OnLine resource
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Protocol Linkage Name https://data-package.ceh.ac.uk/sd/9d64f2bd-2918-416f-b08c-3369edbc1b30.zip Supporting information
- OnLine resource
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Protocol Linkage Name https://data-package.ceh.ac.uk/data/9d64f2bd-2918-416f-b08c-3369edbc1b30 Download the data
- Hierarchy level
- Dataset
- Other
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dataset
Conformance result
- Title
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Commission Regulation (EU) No 1089/2010 of 23 November 2010 implementing Directive 2007/2/EC of the European Parliament and of the Council as regards interoperability of spatial data sets and services
- Date (Publication)
- 2010-12-08
- Statement
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A field experiment was conducted in summer 2021 that surveyed bacterial communities in tree-hole puddles formed by beech tree roots at Wytham Woods, Oxford. The experiment added lime (alkali) to a set of tree-holes and compared changes in bacterial communities to control tree-holes without liming. Samples were collected before and after the manipulation, and some of these were used for growth assays in the laboratory: growing different combinations of isolates and communities on beech tea medium with modified pH.
Metadata
- File identifier
- 9d64f2bd-2918-416f-b08c-3369edbc1b30 XML
- Metadata language
- English
- Character set
- 8859 Part 1
- Hierarchy level
- Dataset
- Hierarchy level name
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dataset
- Date stamp
- 2025-11-13T16:14:51
- Metadata standard name
- UK GEMINI
- Metadata standard version
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2.3
- Metadata author
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Organisation name Individual name Electronic mail address Role NERC EDS Environmental Information Data Centre Point of contact
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