BGS Hosted Metadata
Metabolomic data from the whole-leaf and headspace of barley plants inoculated with rhizobacteria and infested with aphids
[This nonGeographicDataset is embargoed until January 4, 2027]. This dataset comprises whole-leaf and headspace metabolomics of barley plants (Hordeum vulgare) that were root-inoculated with three rhizobacterial treatments: Acidovorax radicis N35, Bacillus subtilis B171, or no bacteria (control). Plants were also either infested with Sitobion avenae aphids or left uninfested as controls. Plants were grown under controlled conditions in glasshouse (leaf extracts) or climate chamber (headspace analysis). The purpose of these experiments was to compare metabolomic profiles across rhizobacterial treatments, and when aphids were feeding on plants, as an assessment of wider-community effects on rhizosphere inoculation of barley plants. Full details about this nonGeographicDataset can be found at https://doi.org/10.5285/e65881be-9dca-4111-8a3b-fb84cf78cf15
Simple
- Date (Publication)
- 2025-11-13
- Date (Creation)
- 2025-08-21
- Citation identifier
- https://catalogue.ceh.ac.uk/id/e65881be-9dca-4111-8a3b-fb84cf78cf15
- Citation identifier
- doi: / 10.5285/e65881be-9dca-4111-8a3b-fb84cf78cf15
- Other citation details
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Parker, M.E., Zytynska, S.E. (2025). Metabolomic data from the whole-leaf and headspace of barley plants inoculated with rhizobacteria and infested with aphids. NERC EDS Environmental Information Data Centre 10.5285/e65881be-9dca-4111-8a3b-fb84cf78cf15
- Point of contact
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Organisation name Individual name Electronic mail address Role University of Manchester Sharon Zytynska
Point of contact University of Liverpool Parker, M.E. Author University of Manchester Zytynska, S.E. Author University of Liverpool EMAIL NOT PROVIDED
Owner NERC EDS Environmental Information Data Centre Custodian NERC EDS Environmental Information Data Centre Publisher
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GEMET - Concepts, version 4.1.3
- Keywords
- Access constraints
- Other restrictions
- Other constraints
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Embargoed
- Use constraints
- Other restrictions
- Use constraints
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If you reuse this data, you should cite: Parker, M.E., Zytynska, S.E. (2025). Metabolomic data from the whole-leaf and headspace of barley plants inoculated with rhizobacteria and infested with aphids. NERC EDS Environmental Information Data Centre https://doi.org/10.5285/e65881be-9dca-4111-8a3b-fb84cf78cf15
- Language
- English
- Character set
- UTF8
- Topic category
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- Biota
- Distribution format
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Name Version Comma-separated values (CSV)
- Distributor contact
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Organisation name Individual name Electronic mail address Role NERC EDS Environmental Information Data Centre
Distributor
- Hierarchy level
- Non geographic dataset
- Other
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nonGeographicDataset
Conformance result
- Title
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Commission Regulation (EU) No 1089/2010 of 23 November 2010 implementing Directive 2007/2/EC of the European Parliament and of the Council as regards interoperability of spatial data sets and services
- Date (Publication)
- 2010-12-08
- Statement
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Barley plants (Hordeum vulgare, cultivars Irina (KWS seeds) and Firefoxx (Elsoms seeds)), were treated with Acidovorax radicis N35, Bacillus subtilis B171, or a control, and either infested with Sitobion avenae aphids or left uninfested. In the first experiment, whole leaves were sampled, metabolites extracted with hexane, derivatised and analysed using an Agilent 7250 GC-qToF-MS equipped with an HP-5MS column (30 m × 0.25 mm × 0.25 μm). In the second experiment, plants were enclosed in transparent PET film bags (31 cm × 30 cm; Toppits® Bratschlauch, Melitta Group, Germany) sealed at both ends and headspace volatiles were collected using Tenax probes and analysed on a GC-qToF-MS coupled with thermal desorption. Data were processed using MS-DIAL, with blank subtraction, internal standard normalisation, QC correction, and log transformation. Annotated peaks were matched against spectral libraries. Features were assigned metabolite numbers to enable unbiased comparisons, including unknowns, across both experiments.
Metadata
- File identifier
- e65881be-9dca-4111-8a3b-fb84cf78cf15 XML
- Metadata language
- English
- Character set
- 8859 Part 1
- Hierarchy level
- Non geographic dataset
- Hierarchy level name
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nonGeographicDataset
- Date stamp
- 2025-11-21T16:52:26
- Metadata standard name
- UK GEMINI
- Metadata standard version
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2.3
- Metadata author
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Organisation name Individual name Electronic mail address Role NERC EDS Environmental Information Data Centre Point of contact
